Every few years this same story gets recycled (the latest iteration, complete with the non-sequitur that "because" [sic] analytic philosophy benefitted from McCarthyism it is not apolitical). This story confronts an obvious problem: "analytic" philosophy triumphed elsewhere (Britain, Australia) without McCarthyism. Even in America, many of those fired were proto-analytic philosophers working in logic and philosophy of science.
A more plausible story is the one suggested by Carl Schorske about the rise of the "new rigorism" across all disciplines after WWII, itself a continuation of the specialization that Weber had identified as the hallmark of the modern research university at the start of the 20th-century. In addition, of course, there was the influx of logical positivists fleeing Hitler, many of them Marxists or Marxist sympathizers, who were no doubt more congenial to the loosely Deweyan naturalism that dominated American philosophy than NeoHegelians like Marcuse. And then, of course, there was pure chance. Harvard dominated American philosophy in the 20th-century, and Quine had joined that department in the 1930s. He exerted increasing influence as the older generation retired (although, amusingly, he wanted to appoint Walter Kaufmann from Princeton in the 1950s--he could be catholic that way!). As Harvard became solidly analytic it was inevitable, given the professional networks at the time, that other schools would move in that direction as well. (John Wild, an enthusiast for phenomenology and existentialism, left Harvard for Northwestern in the early 1960s, probably a fateful mistake with respect to influencing the composition of the profession.)
ADDENDUM: Comments now open, sorry about that.
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